SNP Profiles matching SCA 9

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 Key

 1234567891011121314
_Input profile
CCACAAAAAAGGAGCCAAGGGGAAAAAC
1._RUQ_1730
CCACAAAAAAGGAGCCAAGGGGAAAAAC
2._RUQ_1230
CCACAAACAAAGAGCCAAGGGGAAAGAC
3._MITC-000034
CCACAAACAAAGAGCCAAGGGGAAAGAC
4._RUQ_1089
CCACAAACAAAGAGCCAAGGGGAAAACC
5._RUQ_6
CCACAACCAAAGGGCCAAGGGGAAAACC
6._RUQ_1231
CCCCAACCAAGGGGCCAAGGGGAAAACC
7._RUQ_24
CCACAACCAAAGGGCCAAGGGGAAAACC
8._MITC-000381
CCACAACCAAAGGGCCAAGGGGAAAACC
9._MITC-000106
CCACAACCAAAGGGCCAAGGGGAAAACC
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
CCACAACCAAAGGGCCAAGGGGAAAACC
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGACAAGGAACCGGGG
1._RUQ_1730
AAAAAAAGGGAAGGACAAGGAACCGGGG
2._RUQ_1230
AAAAAAAAGGAAGGACAACGAACCAGGG
3._MITC-000034
AAAAAAAAGGAAGGACAACGAACCAGGG
4._RUQ_1089
AAAAAAAAGGAAGGACAAGGAACCAGGG
5._RUQ_6
AAAAAAAAGGAAGGACAAGGAACCAGGG
6._RUQ_1231
AAAAAAAAGGAAGGACAAGGAACCGGGG
7._RUQ_24
AAAAAAAAGGAAGGACAAGGAACCAGGG
8._MITC-000381
AAAAAAAAGGAAGGACAAGGAACCAGGG
9._MITC-000106
AAAAAAAAGGAAGGACAAGGAACCAGGG
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
AAAAAAAAGGAAGGACAAGGAACCAGGG
 2930313233343536373839404142
_Input profile
ATGGAACGAGGGAGGGCCTTATGGGGAT
1._RUQ_1730
ATGGAACGAGGGAGGGCCTTATGGGGAT
2._RUQ_1230
ATGGAACGAGGGAGGGCCTTTTGGGGAT
3._MITC-000034
ATGGAACGAGGGAGGGCCTTTTGGGGAT
4._RUQ_1089
AAGGACGGAGGGAGGGCCTTTTGGGGAT
5._RUQ_6
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
6._RUQ_1231
TTGGAAGGAAGGAGGGCCTTTTAGGGAA
7._RUQ_24
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
8._MITC-000381
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
9._MITC-000106
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
ATGGAAGGAAGGAGGGCCTTTTAGGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGAAGGAAAACCAACCGGGGAA
1._RUQ_1730
AGGGGGGGAAGGAAAACCAACCGGGGAA
2._RUQ_1230
AGGGGGGGAAGGAGAACCAACCGGGGAC
3._MITC-000034
AGGGGGGGAAGGAGAACCAACCGGGGAC
4._RUQ_1089
AAGGGGGGAAGGAAAACCAAACGGGGAA
5._RUQ_6
AGGGGGGGAAGGAAAACCGGACGGGGAA
6._RUQ_1231
AGGGGGGGAAGGAAAACCGGACGGGGAA
7._RUQ_24
AGGGGGGGAAGGAAAACCGGACGGGGAA
8._MITC-000381
AGGGGGGGAAGGAAAACCGGACGGGGAA
9._MITC-000106
AGGGGGGGAAGGAAAACCGGACGGGGAA
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
AGGGGGGGAAGGAAAACCGGACGGGGAA
 5758596061626364656667686970
_Input profile
GGGGAGAAAACCGGAAAAACAAACCCGG
1._RUQ_1730
GGGGAGAAAACCGGAAAAACAAACCCGG
2._RUQ_1230
GGGGGGAAAACCGGAAAAACAACCCCGG
3._MITC-000034
GGGGGGAAAACCGGAAAAACAACCCCGG
4._RUQ_1089
GGGGGGAAAACCGGAAAAACAAACCCGG
5._RUQ_6
GGGGAGAAAACCGGAAAACCAAACCCGG
6._RUQ_1231
GGGGAGAAAACCGGAAAACCAAACCCGG
7._RUQ_24
GGGGAGAAAACCGGAAAACCAAACCCGG
8._MITC-000381
GGGGAGAAAACCGGAAAACCAAACCCGG
9._MITC-000106
GGGGAGAAAACCGGAAAACCAAACCCGG
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
GGGGAGAAAACCGGAAAACCAAACCCGG
 7172737475767778798081   
_Input profile
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
1._RUQ_1730
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
2._RUQ_1230
GGGGGGGGCCAGGGGGAAAGAGX_XX_XX_X
3._MITC-000034
GGGGGGGGCCAGGGGGAAAGAGX_XX_XX_X
4._RUQ_1089
GGGGGGGGCCAGGGGGATAAAGX_XX_XX_X
5._RUQ_6
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
6._RUQ_1231
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
7._RUQ_24
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
8._MITC-000381
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
9._MITC-000106
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X
10._Pound_7/C_Fld_6B_Fld#_176_Plt#_2
GGAGGGGGCCAGGGGGAAAGAGX_XX_XX_X

Input profile: SCA_9 RUQ_1064

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._SCA_10 RUQ_1730

identical
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._NA_26 RUQ_1230

92.6 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._NA_26 MITC-000034

92.6 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

4._ICS_39 RUQ_1089

90.7 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._EET_272_[ECU] RUQ_6

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._LZ_8 RUQ_1231

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._POUND_7_/B RUQ_24

90.1 %
81 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._EET_272_[ECU] MITC-000381

90.1 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

9._POUND_7 MITC-000106

90.1 %
81 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

10._POUND_7_/C Pound_7/C_Fld_6B_Fld#_176_Plt#_2

90.1 %
81 shared markers

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USDA-TARS, United States of America
Location: Field: 176, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998